Scaffold Ga0137393_10220211

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0137393_10220211

Scaffold Ga0137393_10220211

Overview

Basic Information
Taxon OID	3300011271 Open in IMG/M
Scaffold ID	Ga0137393_10220211 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1605
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002657	Metagenome / Metatranscriptome	539	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137393_102202112	F002657	N/A	MFAKVPAMRSSYRPCLSILAAALLLTPSSFAFDSPLSDQAVREAYFLGQRRDESFASFMDKYTKHLAPPKTGPHIASITFFTPFALAAQLSSQHSSGYSAQQAALDHRGQAESVKIIVQILLTDSYPAYIPRPTGSRSGSPTGFAPRPYNFWKDFDVQVFSEDRELRPFTSSGEPNYLCSEDGGCTLTGATIQFEFLAESFASDSATFQVTPPEGDPVSLDFNLTRLR*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.