NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137393_11021499

Scaffold Ga0137393_11021499


Overview

Basic Information
Taxon OID3300011271 Open in IMG/M
Scaffold IDGa0137393_11021499 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)704
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005598Metagenome / Metatranscriptome395Y
F008391Metagenome / Metatranscriptome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0137393_110214991F005598GAGMVVSSAEANDWWRKNDLAGALLNNLMLLFIAVPIVLVLKSFYASSIVVFAFIVPYGFFLRRLAVRAVEQYLQNHPEEVETFEEAGIISSRSGLC*
Ga0137393_110214992F008391N/AEIVPRFVSSDHADKPFSRWKGKLINDPLATIILNGRVVGVWEWNDDEEDVDLLLFDSNIPKSTEKAIHKRSTDLANFIRSTLGEVRLQGLDYGPHQMTGIHDLKAFWGKGAHVDVRV*
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