NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138369_1002505

Scaffold Ga0138369_1002505


Overview

Basic Information
Taxon OID3300011302 Open in IMG/M
Scaffold IDGa0138369_1002505 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 Surf_B metaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101219Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0138369_10025051F101219N/APLVFATFFFVWKKQEVEVTPESFQEERTQQVHDQVAEPTFPSVAQVENTDTEVAQLSTNEEAVAKIDNDIRIEPSQAPPVSNTRPRVLEILDDVKIATKESVIKTAEDNQALDTRISLVQTSMKHSLMILEEKGTNFGQTEEEVTTAKAHVATHFMLQVVPGTNLIALEEKLSV
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