NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126317_10389083

Scaffold Ga0126317_10389083


Overview

Basic Information
Taxon OID3300011332 Open in IMG/M
Scaffold IDGa0126317_10389083 Open in IMG/M
Source Dataset NameSoil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)736
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameStunt Ranch Reserve, CA
CoordinatesLat. (o)34.0938Long. (o)-118.6572Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019767Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0126317_103890832F019767N/AAEKWQAQRGADLEIRHETGKLLNDHFGPPTAKQTRGEGVLKEAAERLQVAESELSRMRRFAFHFESLKDLEEKHPEATTWTAVKGLLPRLKPQGAQRKNGSANGAASPAKRKQAKPVQLGRVKQSLASLSSKLRMAREALSDDEKKELLAQFKELAEAISDCLHIPVSVGQVSEEPAPPAAPKE*
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Institute for Fundamental Biomedical Research
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