Scaffold Ga0127502_11127867

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0127502_11127867

Scaffold Ga0127502_11127867

Overview

Basic Information
Taxon OID	3300011333 Open in IMG/M
Scaffold ID	Ga0127502_11127867 Open in IMG/M
Source Dataset Name	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1601
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location Name	USA: Stanford, CA
Coordinates	Lat. (^o)	37.4289	Long. (^o)	-122.18	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076984	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127502_111278671	F076984	AGGAGG	MFVENYRRENAESIMAGGESARLPYPKISDEDWRVWSTFLPVRSHNLDRIAAGSFSTTSLHDGIPMQVATEVQRASQHFDKVEIWRKNQVEKDPIAVGVLGEERYMIARWGMEKLIPFETIKKSMPLVLAWKYATSPFGIMVELAGVSLLAWNLLLG*

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