NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153697_1054

Scaffold Ga0153697_1054


Overview

Basic Information
Taxon OID3300011334 Open in IMG/M
Scaffold IDGa0153697_1054 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)35439
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameDaesunglee, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6746111Long. (o)127.3841278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F001688Metagenome / Metatranscriptome651Y
F030083Metagenome186N
F046900Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0153697_105435F000220AGCAGMADERLALVDKILAYVSSPFRLFAMVLMAVLTFAGYFVYANQDLLIGAYKESKKIPTIAEDRVEDAAAHLFKQSGALVVAVFKVNSMFGTRILHRAYGKNGRDKTNDGLDVGLFTQNAANNADVVKLMASEIPCGEYKSAQSEMGLWYIAKGVAYTCRISVPPEPGRFIGQITVGWATQPEDMDSTRAMLQIAATMLSRSKQ*
Ga0153697_105446F046900N/AMNDVLEPALEAAIEFMDDLLSPECYGHAIPTDAHTRAFVVRAMLRREYTRRMQDARTKAGL*
Ga0153697_10547F030083AGGAGMKLMHEHVTGLCRQPLECWYEWEPAEPEVKEAGVVIEPAIPEQVYLVEVWVNGADIFELISDDMKEVIEIAIKEDRYK*
Ga0153697_10548F001688GGAGMWKYLWTELRLMLKTVTPAQAVAHELMHAEHALLQAESGVEYATALVTYNKQRVKRLKAYLGKTEEAA*
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