Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1091 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1091 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	30010
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (21.43%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

30010

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (21.43%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F034850	Metagenome	173	Y
F043829	Metagenome	155	Y
F059966	Metagenome	133	Y
F060909	Metagenome	132	Y
F085713	Metagenome	111	N
F093875	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_109111	F043829	N/A	MSEMQMPKWGDLNTQERHKLLGELIDAMIYSGEAVEHLQTTVEQFRLMGYVRSVILPQTEPNEA*
Ga0153697_109115	F059966	N/A	VKTTNSITEYIKGNQLRKNAKWKLADGVWLFEMQNGIWGSQELFDEFYPTYEYVKFNDKGTNPDKTKIR*
Ga0153697_109122	F060909	N/A	MYMKRKGFYIKKAENGLYLNIFKADFVEYINDQPGEWVKFKIYEKKDDPKGFTHNMDIIKQIVKEDKID*
Ga0153697_10913	F034850	AGGA	MEQDLVLGEEQEVDEVEEYIEEISYSEYISASVDVLNMLESANPMTKIEVKRVESLRKMCYEMLEFSVKSMHATLFNE*
Ga0153697_109134	F010155	N/A	MLDSSNNIRNIYVSALNGFISYNGLNVPVYGQQPFTTTPQNYIVISSITESAINTNNSFGNSVDVIIDIFSEQYRIYDNSIVDNISSQILNILIPDTQVNGFSDTYFEVYPTQRTLSSYLPLRDGEKFVARKIITISNLVNQK*
Ga0153697_109137	F004112	GGAG	MIKGSEKRKVDKYKQTRLLMFTMVRLMGDPKTAPKTPEALWELPGDEHSDNVMSEDEMREIFKRLGK*
Ga0153697_109141	F093875	N/A	MIGEHNLRAIKRGDTWVLPLSFWEDECQEVAINVSTYTFKLMAKNSSGTTIFTWDNAIFVQGATNERTVTLSAVTTATYTLGEFNYELQVTTPSGVYTWMQGFVQVVDQITS*
Ga0153697_10919	F085713	GAG	MGSSVVSCIHHLKLADEYAKDFVRSAPGTRGSVIFADYSKRINWIFRDVITFPHFGDDVREGMRKEIASDAFSYDSLTEKLALLNPEQRETMESLLDDILRGGTIEVNITP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1091

Overview

Ecosystem & Geography

Associated Families

Sequences