Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1134 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1134 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26168
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (63.27%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

26168

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (63.27%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F007911	Metagenome / Metatranscriptome	342	N
F009066	Metagenome	323	Y
F015449	Metagenome / Metatranscriptome	254	Y
F029043	Metagenome	189	Y
F033352	Metagenome / Metatranscriptome	177	N
F044969	Metagenome	153	N
F048834	Metagenome	147	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_113412	F044969	AGG	MSASLTVDASKLQKALKAFIGNTKAEASKEMRIQARMLCVSLANSTQPFGKSAIAKATGEKAVTRDIDRVYKSGPTAVKDIASLPLPRGKTATQNAKQAAAALAGLLQGRTTGKRGAKIVSAAQDLLDRINYKPYVNTRIGVFDQGQAHNKARFGRRKSVPKNQFVSQVVTKDSQLTKYFKEKRGNVGIAKSGWAVCAGLLGGFKGIPKWVYRHTGGGRVNDQSGKGLGIVSKPFIQMTNTIPWINAVISTATIQKSIDIQITKMIKRLGYITAAESKKAGL*
Ga0153697_113422	F029043	AGG	MSTDDQACQALQYLLDEGFIELGYIDGKPAVHLTTSLADAQKAILTIVSKDSADWWK*
Ga0153697_113423	F006891	N/A	MSADQVAELTERLSEVRCDVARILERQTMVMDMLEKSQASLGEYHGRLTNMERDAHTIKTKLWLVAVVSGAVFSTIWELIKRRLAF*
Ga0153697_113427	F009066	GGAG	VSQMSPEHEKHLAGILSDLVKDVSAKYRRGQEEHGGALWRRPVWKDTWDEVLDLCTYVHTLRLQLGVIGDLALQGASDESLCASQSRENCRQILAVLQGFPSAADKK*
Ga0153697_113429	F048834	AGGAGG	MAIPGVDWAAALDAYVAGDRAEVVPPGWYTKIEISKQWGKSDVYTNKILTRMIKAGGAERKVFSIRIKICNRGGKIGYCRRVPHYKLIKPAKK*
Ga0153697_113436	F033352	AGGAGG	VSEFRLIENIEVMACRNSAERVVKALNRGEVQQAKDLARKHEIAWHVTDREFQTLNQPHRTNDFCDDE*
Ga0153697_113440	F005502	AGGAG	MKAMLWITAILGMTTGQAANVMIDLRPQPKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWLAVDTGTAVKSKKASRGKLPVVDVFAASESQFKAMRLPKVATVEVTR*
Ga0153697_113443	F081048	N/A	MSVKRITWQIEILERAKKSLIDGRLVIARSRLDMALHIAKELLKRAQAYQKRDAEKKK*
Ga0153697_113445	F007747	GGAG	MKDLGKITFGKARPAPKQVLLDVTYDRKTGKALHAFGLKQLKKDPEAVIGYVIAKALKAFAKK*
Ga0153697_11347	F007911	AGG	MPAVTMLDRLVEAALQELLATTVTGVNYHLSHDKTENLPPSITIKATLGTEEPVQGSGVFSVPVDIIVEDSYDDTTVDAHTQKCSKVLQAFYDSSSLATRLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTYRLAVIAMPNSIAS*
Ga0153697_11349	F015449	GAG	MVDSFWGTTNIKVAAAASAFGAKLRQSDPVTCIVEEGGHRKFTFWFSTGDDQDAKAEMERNWVDMKSDPESAIRYVRAALENRETLLGLMKRAEPILSIKRGSQTLLISERASPELKRAMLKKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1134

Overview

Ecosystem & Geography

Associated Families

Sequences