Scaffold Ga0153697_1321

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153697_1321

Scaffold Ga0153697_1321

Overview

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1321 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	15498
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F000332	Metagenome / Metatranscriptome	1283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_13212	F000166	AGG	MPNIPTPEDTKLFAQSVKKWQQVLSLGDWRIEKGSKAAKAAMASVEFNSAARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLLSKDSNGK*
Ga0153697_13217	F000332	N/A	VRWLVALVLTLSLQSTAKDGCHVREFYIIAWTIHNPSDRHQQMSMWLTNNVRFCRSQDLTVIWNNLSEWAGTADSAELRTKVIHGYKDALEREKK*

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