NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153697_1409

Scaffold Ga0153697_1409


Overview

Basic Information
Taxon OID3300011334 Open in IMG/M
Scaffold IDGa0153697_1409 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13352
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameDaesunglee, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6746111Long. (o)127.3841278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076091Metagenome / Metatranscriptome118Y
F082694Metagenome113Y
F085382Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0153697_14091F076091N/ALAYKAQALADLGLAVTSYSDSGTSVNKQFGLPPATRILEINYALSRISPTLYGGAHTSIQVNWDSRVDL*
Ga0153697_14096F085382N/AMSIYDTFLPDFQGLLADIGVPATVGANLFLVGLSRPMNTPKFDSGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATLAAGVPIAALGEGKKFTVNGQVLRIKGQSYKQTSAVIELECVDDNQ*
Ga0153697_14098F082694N/AMGTKSSRQILEAAIASHLSAQTELAGVSIYTGDGADINVLPKAIVLCDSARAPNDMPQGLGNYSCGTRVTVFSSADDNTLAEHRARCAAVAGAMQDLTAIQAVFVAGGDALCYDVTPQSEDEGVNERSWASVFSYDILIVVNPQP*
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