Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1024 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1024 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	60463
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	67 (83.75%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

60463

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

67 (83.75%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002286	Metagenome	574	Y
F002653	Metagenome	539	Y
F004759	Metagenome / Metatranscriptome	424	Y
F005233	Metagenome	407	Y
F006622	Metagenome	368	Y
F023041	Metagenome	211	Y
F042903	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_10241	F006622	AGG	VNEYQKQFDMFLKVFVRLCVAWWVLGLLQYLPDELAGKIVDKLLGMIGL*
Ga0153698_102413	F004759	AGGAG	MDKKDLAQDKKMIKSAVGKHEKNMHPGKKPTKLKAGGKTNGDMLKYGRNMAKVMNQRSVGRGG*
Ga0153698_102432	F005233	N/A	MLEHLIHGEFHPDVVDMTAATLLPFDKADPTTTIDAKVKTADWLKDLGLDDEEIETKADAQAARKSFASLVTGQSVATTQQALTSVKAPAAVQHLVGMLTAYDWAFVEQAKELRGFAVAKILEEVEHPDARIRLKALDMLGKVTEVALFTERVEVKKTEMTDVELETRIKDKLNRFMGVIDVVDVSEEKSDED*
Ga0153698_102446	F023041	AGGAG	MKHTPYDTGKVKIGLLYTPPPSIPTPEETWVQGLLLGDRQGMDELTLTTIQSIGLIAFIAIVMLLTGGTSNA*
Ga0153698_102455	F002653	GGAG	MLEADFSMTEAELERRVHAMSDEEQAHFKLLIHKLVMCYGEGKAQGVVIIGRAEDQLAGVVTLNCNEMEASQLMLAANDFFGFLNLLDAPPKENFN*
Ga0153698_102456	F042903	AGGAG	MAKLPYTYTICSDQEAPKNFTASCKDMGELLRHSPNGDLTINQKRTAAWDMWSGNHMGHIEEALHEMAKKEKPNDK*
Ga0153698_102470	F002286	N/A	MAYSQKIIDDVAKTPKSLGNQLGRWAIHLDFPVTKIAFALGVSRQTVYNWFTGTEVFVAYRNRVEFLTKIMQTSRTADEAWRKICTEYNLDP*
Ga0153698_102480	F006622	N/A	AVNEYQKQFDMFLKVFVRLCVAWWVLGLLQYLTDELAGKIVDKLLGMIGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1024

Overview

Ecosystem & Geography

Associated Families

Sequences