Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1073 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1073 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	40723
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (81.43%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

40723

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (81.43%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022833	Metagenome	212	Y
F037627	Metagenome	167	N
F049485	Metagenome	146	N
F050983	Metagenome / Metatranscriptome	144	Y
F061646	Metagenome	131	Y
F061649	Metagenome	131	Y
F102396	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_107311	F049485	GGA	MAHSGLQPISNILGSKDTQSLQLWLKRVGASMPDISTVERKIMDNQKKPPYVPQEMKGRMTKNTYKKQGSTEPDWKGSFMYKGEIINFGAWENDAGYGIYYNMKLNDPNWNKQQQQYPKEVTDKPARSYPKDSDVPF*
Ga0153698_10733	F061649	AGGA	MRDQTDCHYPNTRLCLRDCEDGCRARKTVWRKRTIKELQDQELEDEAFARIPQHTYECKHLGICMDRPSHCLDCPSNNA*
Ga0153698_107340	F050983	AGGAG	MSLSTNKIILASAQTNTAGAYFLTTTVTAVSTGNGTVIPAGVYVMFPQANTSVIAYNGSSNATVMAANVGGVVISDGVNVYAKTTASSDVVTLLATNGGQAVSGTYNS*
Ga0153698_10735	F037627	AGG	MKPLICADCKWHIPSKQSSSVANYDRCKASETINLVTGESTYKYCESMRMVSSPCDLDGKLFELNQADEEIPNGN*
Ga0153698_107356	F061646	AGGAG	MQSRYIFDKVNQDITAAIARQVDRDSPTRAHAPTHDDLVCALIFIVSITLLIFL*
Ga0153698_10736	F022833	AGGAG	MATKLQDSLVRKIQENRELKDTIKDLHTQAEKDKEFLRQVQDESNNLELALKKCIHSKAELNDKIEQLTDDLEKYTELYARATLVVTALGEAVFFLTKESSHGKR*
Ga0153698_107364	F102396	AGG	MFFNTKRIEQLEREVIMLEDLFADALKRIMKLEESRWGLKVDGTAKAKPGRKVKNERIS*
Ga0153698_107367	F049485	GGTGG	MPDISTVERKIMEQQKPKFVPLEMKGRMTKNAYKKNDKEPDWKGSFMYKGEVINFGAWENDAGFGTYYNIKLNDPNWNKQQQQYPKEVNSYPKDSDVPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1073

Overview

Ecosystem & Geography

Associated Families

Sequences