NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1115

Scaffold Ga0153698_1115


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1115 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)34787
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (76.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F005738Metagenome / Metatranscriptome391Y
F006740Metagenome365Y
F007742Metagenome345Y
F008303Metagenome / Metatranscriptome335Y
F032264Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_111529F032264GGAGMNYTDYETQRAILIEYLHVMIARCDWHGVADVAMDLRELEAENK*
Ga0153698_111530F006740AGGAMPAFETWSQENLAKFAVEAYAKMQEQQDHIEQLQNDLKDAIKAYRELLK*
Ga0153698_111533F008303AGGAGMIDRLILSAVLGTVGFNGLFPDPPPPLTLKQKAKERSISEMCDRKSKSKTAKDLCKRWKEQQNA*
Ga0153698_111535F002420AGGMTFRETTVKYIKDILRPKTIYEVIHTELQEAYLRKLEAETAAEYADAAIKYNSRRIERLKQRLFEHAEDT*
Ga0153698_111547F007742N/AMLWVLLMTYYKSKAAAQALADELTNQDRDAWRYEVHAAARGFYVAVFDDDGHFLGNL*
Ga0153698_11159F005738N/AMSFGVALRNAVSIGLGGIATLFSGTLDAGAAVDNLLTESGANIVQENGDFILLE*
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