Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1116 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	34765
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (60.71%)
Novel Protein Genes	21 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	12 (57.14%)
Associated Families	21

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F009142	Metagenome	322	Y
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F024265	Metagenome	206	N
F025225	Metagenome	202	Y
F029043	Metagenome	189	Y
F030060	Metagenome	186	N
F033350	Metagenome	177	N
F035669	Metagenome	171	Y
F048161	Metagenome	148	N
F074559	Metagenome	119	N
F093492	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_111611	F003049	GGA	MKNAKQIIGCRQSQKGEHTKGLGIIKFGKSRPDTTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK*
Ga0153698_111613	F030060	N/A	MTKGIIASESPEIHWQHLNVAGGRVLDLGCAFWTEAERQEANGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAPQMNTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLNEFVAWFGSIGFECYRHDSASFCPEISVIYGRLKC*
Ga0153698_111615	F008741	GAG	MSVKSIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFPQYHSVFDLVSYVKAGSKGDVLDLEIWPNKYEAYRKSKRSWTDFVYSHPEIKDADKTNIIFDKLDDKPAEGLPESYNLVAAFGNSQGFYRNPLDIITKARTDMGKDNFYVMTPPEIQIQGLSTYTAPSVEQMAKAIRGAKDFWAINSAPIILASVVRRGKPTAFFPQKNEWETDNIFDFEGMFKMD*
Ga0153698_111616	F005584	AGGAGG	MAGTISTSYFATDLSYMIQDLYQSVTGLGSSSVSASVTDLSTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT*
Ga0153698_111618	F009142	N/A	MNQSVQINIEDAIENLLANVPNLNTYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDNGLRFLDFSEERNSMYVAVI*
Ga0153698_11162	F008938	N/A	MITQKELREKWGIDAGQLSRMVKRGMPLTSESDAQRWRLANQKRVSKNLHAPSPTSSEPLKDSDAESYKSKTSLGRLNRAKQAEVVAYSLVATAANNQNPVAMRAAVQGWGEAKKRVAEAEMEHARFEEVTRVLVRMDEVREVFGKWLGAIRNLMDAMPSSLAARANPSDPECAKRAIQEGIDQIFVTIQKAEGAFK*
Ga0153698_111621	F029043	AGG	MSKDEQACKALQYLLDEGFISLGYIDGKPAVHLTTSLADAQKAILGLAKDSADWWK*
Ga0153698_111622	F012433	N/A	MSADQVADLRERLARIEERQTNIISILERHTSELAQWTAKINSKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR*
Ga0153698_111623	F006138	GAGG	MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVKNNQGDIVAIGYFNATTSYSLSVAITGAYNVTAGAALAALANATTAIGNGSLRIDSITINKSNDAFTTLDISATGYPNVT*
Ga0153698_111625	F019102	N/A	MSISLDEELNSAFISPDKEYMGEKLAPYTEGSRLLLMQVRDDNDSSIYFIWSFIYVHILLAKNKKEAIKLAWNRDLFREKIMDFIEGKTEADRDEATQIVSNILDEAQKGKVEAIPAPHQAELGNA*
Ga0153698_111627	F025225	AGGA	MITVELLNQAKFMHKLQQYQKASKKNMADVINSKLGDVAITAIGTTYRTTAAKIASELQRVEGKVVTKKVFKPIGFTKNGKAKRRKIGEYAVGYKAKNVNFIGTYKLVNWLLKNRGLPTLGKTKQGTGGLGMGTKPGTIGALARRLVAGRKNAVNYIRNGWAAAAYAFGKSPSLTKGDYSKEAIKRLGGGEKADSKTSLMEGFIFNRAGYLDTKSYPTKKRSVSGAAKMGIPGLKMAIDKVMNDMNVYLARKNKEASDKLKL*
Ga0153698_111629	F093492	GGTGG	MASLVIGSAISSKVLQRQNLNKEPNGLETIIEAYAIQTANRDTVIPQKDTLHSAFSSSTKKYSRMVVESVTTEEQDGGITQMLVTFVGLTSSTGLPPAIVRLIPTPDAGIFGPPLIVEAEFITDINESQFIKGNINATAEIKLGNISFGQVNQMPPFINGTKMPENPIAPYTGQQQGLSLNSYFGYCTDSHACERRGLFLVARTTYKEVQAGFRFA*
Ga0153698_11163	F048161	AGGAG	MILGLKIGVGIVLGIVLLNIAFWACVILAYLLATLFECIGKWINK*
Ga0153698_111630	F035669	AGG	MRENQLTELQGTSILTKSFFNKLIRRIEATKPLAGSGITITEKENGFEVSFGAGGGGFQEVTLNVCLNGTPSTITVLAKA*
Ga0153698_111633	F012113	N/A	MNQILTFVQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*
Ga0153698_111638	F074559	N/A	MKAQNPWQKLLQQHIKDRFAPPAPEGYYTIEQVSKILGKTEVTTARILNQMLEQKKVDAKRHPFVIPYKDRFVVRQLKVFKILPPKHPQK*
Ga0153698_111641	F005846	AGGAG	MKSFPLPARPQASGVPAWHIEFKKDTAIEGKANGWRGLFHQKTGIGYNRHGKIASNHNLMVERLANAGIKAPFIDCEIMGQRTKTGKGTIVVMDAFDPENPKPYAERMKDIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKSLDDGKYPFITNPNYCSPSWQKQRIRW*
Ga0153698_111642	F005702	GAG	VIIFLVAFFGLLILQGVRIFAKHIDQQNYDRRQFYLFVAAELDKMDKIVAEGNQPKEPKQPELVLPTKNWVGRN*
Ga0153698_111647	F033350	AGGAGG	MSAVDVQVPETKWSMLVWKTLKEKPHNDERVLMDIGGEVVVGRFVDDSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0153698_111652	F024265	N/A	MNETYTTPEVKANGILTDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*
Ga0153698_111656	F007164	N/A	MSEKQVGMELQKTVRQLEKAKENAIQQMGEAIGLAADAGDILLSARTEGLDLDAIQEIAQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSITQWTPAQRTQFVEEARPIVEAFKEAGGEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1116

Overview

Ecosystem & Geography

Associated Families

Sequences