NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1132

Scaffold Ga0153698_1132


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1132 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)33613
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (75.93%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F017968Metagenome237Y
F029755Metagenome187Y
F051918Metagenome143Y
F065786Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_113219F000332N/AMRWLILLLLLGLVGAVAKNGCHVREFYGIGYITHDPTQRHKEMIAWLSQNAEHCKSTDYVVIWNNLAEWAGSADSTFLRAKVVHGYKDALEREKK*
Ga0153698_113223F065786AGGAMTKDDLVNLLRITGAQESAIDAVCAAYDAGWNDALDDYAKRIVVLPFGKDTIGSFGCFIKDAKK*
Ga0153698_113228F051918GGAGMIDQLKDYFRLPSAKELAAKELEMAQRKLLEALSAQEYAKRMGDYHSDRIKRLTAYLKDEA*
Ga0153698_113230F029755GGAMTMTDYKLHYYFDDVVSYDNGTTLENVKVGYDYYPAEINMPHDHNSAEIYDVFVFNLKGDDISCDLPLSEFQHIMSETKIHHARMLKEQNEI*
Ga0153698_113237F017968N/AMKQTEFLTEPEKGNNLANLSSSERLNLRETMRQTEAVEWIRRFKKKALEEGGGEAQYWWQQTLADIAKKRGQPAADDLRQRMNRIKNETSRKS*
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