Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1135 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1135 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	33468
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (77.36%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

33468

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (77.36%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F004762	Metagenome / Metatranscriptome	424	Y
F005503	Metagenome / Metatranscriptome	398	Y
F016643	Metagenome	245	Y
F043396	Metagenome	156	N
F097344	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_113527	F097344	GGAG	MFTVLELAGAVILASIGWFLVGWSIGFKEGVKDGFNRGRAAGLRAATNYVKSL*
Ga0153698_113529	F043396	N/A	MRDMGINKITLTRDEEIQAAAAAFICEFRGEENFYFHDQAMRGNIHDSIKRTAEAFGAEIAAARFFGIADFKIELDKFKIRADIGNRIEIKHTRWLDGHLILNPRDRADDLAVLVVGESPIYYVKGWIPIKAAKTSRFKHDKTESWWVSQHNLNSMENLKESNYGQIEI*
Ga0153698_113541	F016643	GGTGG	MTLFNPVWRINIGGIIYTNYVLANLSTTSGRTNIYEQANAGYVSLELINLDQSNIDIEINDAVTIELQDSTATFVPIFGGTVVDLGIGIAASGVVGINQTVRITAVGALARLPKALTDGVLTQDFDGDQILTILTDLLINSWNEVPAALTWATYDATTQWQDAENTGLGEIDTPGSYELAARSSSTIDVYSLVSALATSGLGYLYEDAQGLISYASADHRSIYLANNGYTDLSAAQALANSLFVQTRAGDIRNEIVIKYGINSSSEVTDTDATSIASFGRLAQIITTTIKHQADAESQAAFYLKLRSYPQANFNQITFELTNSEIDDADRDALINIFMGLPLRITDLPLNMASGTYLGFVEGWSWRASYNSVSVTAIISPLAFSLQAMQWEDVSVLEAWNTISGSLNWADALVVA*
Ga0153698_113543	F004762	GGAGG	MALAAEVLQFLIPTGGWVISGDKYEGITFIEAQPITKAQFEAGFAQYDAWKAEQDSKTEADKKAAQAKLAALGLTADDLKALGL*
Ga0153698_113547	F005503	GGAG	MTTSEIGLFVLMAIACILWAICSYAVGYKEGHREGYQRGKAVGRHISAKAVK*
Ga0153698_113548	F001897	AGGCGG	MAFMDNYEGNKERTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAFRNQLETQPAGVDYAHGFLAAYSDKMRRWMIEDTCTSALMRVMALVLGGAEKATAEVMALVKTETPAADYDYWTTKHGDVPSYKTRDEAEQAEPIAWDIPAASAPSCSHGSMRWNQSKPDAPKAWAGYFCNEKIKEKQCKPQWFVLTSDGTFKPQV*
Ga0153698_113549	F000403	N/A	VGGIQVSDYIEIINPQTRIAKVLLEGKVVAEYRVEQCDKCSRLMKFDQFGYQKGYDRTENIIWFCGGCR*
Ga0153698_113550	F000903	GGAGG	MINRVEEVQCIIAAIQHCHDRNADHPTRFQKNLSWFEYVAQMAESMAAELVVAKSLGYDYQPGITWDKSKADVGEHIEVKWSANPTSNLWIQESDRADRDVAVLVTGHSPKLHIVGWMPVGVAKRPRYKNTSQNNWTVPQTNLQPIETLARSNYAHPVV*
Ga0153698_11357	F000403	GGTGG	MSEFVEIINPRTMTCKLMREGVIVAEYKVEQCDKCAMIVQLDSLGYQKSDPIENVIWFCKGCR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1135

Overview

Ecosystem & Geography

Associated Families

Sequences