NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1172

Scaffold Ga0153698_1172


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1172 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)30969
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (77.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058136Metagenome135Y
F061842Metagenome131N
F063684Metagenome129Y
F066712Metagenome126N
F073247Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_117224F066712N/AMFNFNPDEKRVQLAALLQDPTQPYRKYSGPLGAGPSAGSGMNSEIMKMLMQDKQKKAPVVEKSTQYDPASQNFTPSDY*
Ga0153698_117237F058136GAGGMIQTNEEKVAAAIAYLRSRDKYLLDGCKWVPTPAEKTDVKKTMQQYREAVK*
Ga0153698_117238F061842GAGMTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKAADLELALAYVKYMETRSK*
Ga0153698_117241F063684GGAGMIIETATISTGELQEALQNYCEVNGGIPKTVIVQSYAKQIVVSLEPGGMVTADEFNHAATCA*
Ga0153698_117245F073247N/ALSRKRAEVTERDRADALTDIVDEVMDYGRYPRRGRAQVDLYEFVSEHLDTSFAFELVVAVLSSDKETVQTRISRLYDQVQEMLKKHYIDTDIVEELAQEIADASEE*
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