NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1177

Scaffold Ga0153698_1177


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1177 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)30726
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (77.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000649Metagenome / Metatranscriptome960Y
F008072Metagenome / Metatranscriptome339Y
F024973Metagenome / Metatranscriptome203Y
F025282Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_117722F025282AGGAGMIYLAAVCHDIKSNTLEATWLEEVLDDNGDLKELKRVKCRNYSVEQKDEFLADCGADGEKYTTMARW*
Ga0153698_117738F024973GAGMIWTLVLVTGINMNSIMVVGYFEVESACQRAAKEWRDLGYKVGCVQSVVKK*
Ga0153698_11774F000649GGAGGMSKNQTHYLPSGKVYKGETHKSGSVLMTGAKHSPTSKVLSHTPPKKKK*
Ga0153698_11777F008072N/AMRRKDSHDRRYKKSVWTQNQKLEAVSTYLMLGNMAETAIVTGIPHQTLKVWKTADWFKEFALQLKTEDVQQMDSNMKRIINKALKATEDRIDFGDAQFDQRTGEIIKVPIKAHVALKISTELLAKQQKLDEKPIKEEVERTIDDRLLRLSEEFAKFASSHKITVLDKAKTIDVQTVEIK*
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