NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1232

Scaffold Ga0153698_1232


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1232 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)25908
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004450Metagenome437Y
F011669Metagenome288Y
F014954Metagenome258Y
F033353Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_123220F004450GGAMNWVAAGLIALVMSTAYLLDGPSEHEARVDTAEEKIQKLCGENAAWKLLDDGSVQCYTHRGLKTRKVAL*
Ga0153698_123221F011669AGGTGGMSDDEDYELANWMHLIATCILALFALVGIAGLVGYLWGMT*
Ga0153698_12326F014954GGAGMKTITLGRARYIVRDDRHTFLSDILKLTGKHKPVKSKGPERRLYPADGANMSTAAYVAQYYALNSTRHNFKNLAAPYGDANLVGFYDSLSDRLSVPQGEDSMEVCHED*
Ga0153698_12327F033353GGAGGMRTEFHNPEFQITSEVTQTPDGRWRVLLRDDDSGQLVLGAARLFVAEADALAYAEGLCA*
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