Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1249 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1249 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	24740
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (75.61%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

24740

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (75.61%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F002794	Metagenome / Metatranscriptome	529	Y
F006139	Metagenome / Metatranscriptome	380	Y
F009743	Metagenome / Metatranscriptome	313	N
F048950	Metagenome	147	Y
F085392	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_12491	F001326	AGGCGG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYTVRALPQYLFLGIDTQGDLLYDYQIPIADQVLYAKTASDVERTAATGTVANDPVCTWVTAAQVMTYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA*
Ga0153698_124910	F006139	N/A	MDTQIVVALIGGGFLVLVALIGKIGSDNKKDHGQVHQTLGRIEQKIDNHVENHQ*
Ga0153698_124911	F001872	N/A	MNEFIRQVLHHSNGAFVNLGSWGQRDVKGKPGTLSVHATGRAWDAGFTTSEKNPNASRKTALPFIEKMVANANDLGIQMVIDYFPKEYGRAWRCDRQVWKNYDTKTVSGAPGGRWFHIEISPQAADSVIWVKAAFLKVFGEIPPKA*
Ga0153698_124914	F002794	N/A	MERNKMSEGTAYNQGELTEETRKLVLDSTANANHTMAIFNLIDDIMAVSKNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDLAIKALQAHS*
Ga0153698_124915	F002421	AGGAG	MKTCTICKGSIAYPDIQGKTHFVCDGRVPVRKQAPFIQGMLASQSSADARWTREEQNKVDAAILHVARTKGFFTSDDIWKYLGDQFPVTKGIAGRLNAAARRGHIRNTGELAYAQRGGAHDHAQRLSVWAGI*
Ga0153698_124918	F048950	GGA	MTLEELISAIERLQTVYNSMVEEDQREAKQYVRWAIKRLADKAYMAAL*
Ga0153698_124925	F085392	AGG	MSFVIASERLGKIGDPFTPKDGINIDGLLAGGFIVRAEVSTTEEEKPAKTKPKKASKE*
Ga0153698_124933	F006139	N/A	MDAQIVVALVGGGFAVLVALISKIGSDNKKDHGKVHQILGRIEEKIDNHVENHN*
Ga0153698_124935	F001872	GAG	MNEWIKQAIAASNGSLWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKHPQASRKEALVFIDKLVANANDLGLQCILDYVGPNGRAWRCDRYAWKVYDKPTLHGVPGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA*
Ga0153698_124938	F002794	GGAG	MSEGSAWNQGELTEETRRMVMEQAMNTNHAMAIFGLMDDILAVSQNPHASIIRRLRTMKNQLSLNDPMPLYDVTTLDQAIKALEAHS*
Ga0153698_12494	F009743	AGGAG	MKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTSPLYSDYCCWMHTILKIKGEQVGDNWREWISKNPDIDIMPVLDETDPNPTDAAPTAAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1249

Overview

Ecosystem & Geography

Associated Families

Sequences