Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1271 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1271 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	23009
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (51.35%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

23009

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (51.35%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009125	Metagenome	322	Y
F016125	Metagenome	249	N
F016936	Metagenome / Metatranscriptome	243	Y
F029363	Metagenome / Metatranscriptome	188	Y
F034845	Metagenome	173	Y
F042326	Metagenome	158	Y
F063471	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_12712	F009125	GGA	MNTDNIRAVLTAATPAAAMVSLSQVNEVAALVGTLLGIAFLLWRWRREAKKED*
Ga0153698_127120	F029363	AGGA	MENDDDKMLFAAQYLRTLTSYKTEITISRRVTIKTGATKEEWDYLIIFGDIMNRGPWRWECAQAATLDATMKITSAQITAQGGERAREFLQLTEAAAKLGLKLVEAAP*
Ga0153698_127122	F016936	N/A	MNLELIHAELIRIREALEARPYASGAPAAKPASSFPKSDEIPMPTEIIEDAGNVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRLGNNGKPFPPRPEDVLLRNAARTIIHQKRGTIAGAAVPTTPAATSVNEEHVPF*
Ga0153698_127129	F042326	AGGA	MISDAITLAAIFASGGLIGYIIGAARGRKRGRDEQWVECFLAGEKREKARREADGRFKSKTKS*
Ga0153698_127134	F034845	GGAGG	MTASRTAYWREYNRKNAAKKREQYAAFRERNKEKINAGKRALRAAGKVAPRKVAAVRVVKPTVVKLDEGKAEALLTLREKFAAFRAKRAEGRE*
Ga0153698_12715	F063471	N/A	MYTNSAAIFRGDIAGVVEQAKDFEAGLIGTAVMPILEVPVRAGQYPSFVLKEGQLLKSDVKNRAAYSAYPRGTRAFNQDTFTCLEFGYEEAVDDTVTLDVARFFDAEVIAAKLAKRKLLLAHELRVAAKLFDNSTFTATNSGTAYTTANLATFDAGADVQEAIDRLLAKGESVTNLSVIIPYPVWTRIRASTKFQNRLRGAGISSDTILNASTQAAAEVFGVASVQIGRASYDTAPEGVAFASGNVWANTFIWVGSVTQASAGFFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASQYTAEKVVNANAGQLITTQYS*
Ga0153698_12718	F016125	AGGAGG	MAAVRDFDPTQINSDFSAILEQAGISFTYQGVSVTGIWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPKVTQTLSRASITYFIERVTLDAEGAGCEISVAKVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1271

Overview

Ecosystem & Geography

Associated Families

Sequences