NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1272

Scaffold Ga0153698_1272


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1272 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)22977
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (63.64%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005584Metagenome395Y
F005702Metagenome392Y
F005846Metagenome388Y
F006138Metagenome / Metatranscriptome380Y
F008741Metagenome328Y
F009142Metagenome322Y
F010463Metagenome303N
F011284Metagenome292N
F023059Metagenome211Y
F023833Metagenome208Y
F024265Metagenome206N
F027777Metagenome / Metatranscriptome193N
F033350Metagenome177N
F090073Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0153698_127213F006138GAGGMPATTVGQSGLVFGLTAETIGLVQSFSETRNIEKNEVRNASGDITGIGYYNPTTAYSLSVAITGANTSLTVGGAFSTLANATTVGNVRIDSLTINKSNSAFVTLDISATGYPNVS*
Ga0153698_127215F090073GAGGMSDILNEELNATFVRPGRDFKGQPLAEYTEGSRLLMIQAKEQEDSPVYFVWAFLYLHILLAKNRKEAIKLAWNKEAFKESLFDWVSDKTQEDRDMATNIVSAIIEEASKARVSIVSSGGEGFSVGNE*
Ga0153698_127223F023059GGAMWEAILASFAGVIGIIAWWTKNRAKTRKERDDEEIAYNRRLRDSEVDAWIHRR*
Ga0153698_127225F011284N/AMTSAQSVEKTTEEVFTKKHDLHLTTLQMAAVESMERKYKKGVVEHGGTKLWEMPTARLVENAIEEATDQLTYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPL*
Ga0153698_12723F003049N/AMKNAKQIIGCRKAKKGEDTKGLGMIKFGKSRPCKTKYVKVDITYDDKAKKELFEAGMLALQHDPEAVIQYVIKKALCELVKK*
Ga0153698_127230F005846N/AMTSFPLPARPVGSAVPAAHDEFSDGFSIEGKLNGWRGWFDQETKQGYNRHGKFAINHNLMADMILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYVERMKEIEHLEAVTFDVQSNKLLRFVRLAHDKINSIWEEMNFQNNKAGEVVWEGFVMKALDDGKYPFITNPSYCSPAWQKQRIRW*
Ga0153698_127231F005702GGAVIIFLVVFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAEIDKMDKIVAEGNQPKEPKEPELLLPTKNWVGRN*
Ga0153698_127234F027777AGGAGMSEELPTFWHEEPANKKRPNETTDEWVVRLFGAFPDTEFDQRNDFRSLNLPVSGSREDRESLGDYDYNQQPIRRMK*
Ga0153698_127236F023833AGGAMKSHSELIQDILNDVRSKAASLERERCAELVQQLADGTEDQVITGILNEVVTAIRRLPDAN*
Ga0153698_127237F033350AGGAGMPTDIQIPETKWSMLVWRTTKELPRNDEKVLMDIGGEVCVGRFVDGSFVSRSWGHSENDVRLWASWPVAPKW*
Ga0153698_127241F010463N/AMNHPQELVLAATIHRVKICEDKIKEFEQMVSTLTSQMAQNRAELASKGLASLVMGTTTPLDIPKELVPTYGKHRARGNRSHSIVKKRWELWKAQHDSGLSIQEIAKAWGCHHTSILNAKNRNFTPRKATGRNKK*
Ga0153698_127243F024265N/AMNETYTTPEAKAQGILTDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*
Ga0153698_12725F008741GAGGVAKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFPQYHSVFDLVSYVKVGSKGNVLDLEIWPNKYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAVGLPETYNLVAAFGNSQGFYRNPLELITKARNDLGKDNFYVMTPPEIQIQGLSTYTASSVSEMAKAIRGAKDFWAINSTPIVLASIVRRGKPTAFFPQKNEWETDNIFDFEGMFRLD*
Ga0153698_12726F005584AGGAGGMAGTISTSYFATDLSYMIQDLYQSVTGLASSAVSASVTDLATSSQLDIGGEVFNITQSLVVLASSISAPTIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT*
Ga0153698_12728F009142N/AMNNSVQINVEDAIAGLLASISGLNIYKTNRIGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEDFDAEYCSIFEAFYSETQPLFTKIQNNILDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELADGLRYLDFHEKRNSMYVGVI*
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