Scaffold Ga0153698_1287

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153698_1287

Scaffold Ga0153698_1287

Overview

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1287 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	22612
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (76.19%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001799	Metagenome / Metatranscriptome	632	Y
F002487	Metagenome / Metatranscriptome	554	Y
F007518	Metagenome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_128720	F007518	AGGAG	MTEWTKEEDEAFNDVEKQSNLGKQILRNLGQPYHFDIYVSPSQRNLVLEEVAKEFDKMKAFGTTAESFATFVRNMKNV*
Ga0153698_128735	F002487	GGA	MITREAAIKDLSHTLYCCYCCEPKTYGSCCGENHFVEFADLYEEDKEAMIEDYLKEE*
Ga0153698_12878	F001799	AGGA	MDKHLKAQWARNLLADDFFKEVIDNLKKEQISVIINTNSSDIGVREDAYRHIKTIDLITGHLEGLASETLIKEKKWKIL*

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