NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153698_1359

Scaffold Ga0153698_1359


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1359 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)19593
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (19.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089880Metagenome108N
F094938Metagenome105N
F097609Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_135921F089880N/AMKKELELFSPTQEGILVPVATYLRQMAEFVKTEWPGFAITENHIKKAWAKLQKNEYLDDGTPDEMLEMYEKMSADWDMALELEEERINVANTPVEEPVNESLALIESVKDGLELSSFTKKFDIGAGMTQCVPRGKVEMKDWVAAFAFGLTLESGAQWIVGDSVVALENAGHDDVINQLCANFKKSYSTVSGYARACRAFPAAKRDASLPFTVYREIGNANFGDAKTNANKQQAMLEVAKVEQLSSAEVRNRVRNEQGKDDKSVLPHRYLVLNVGNYGNSEVKRSVPEKLEAHHFLIDRQDMSWFDAAQGEWVKFAKEQ*
Ga0153698_135922F097609N/AMSNQLEGLEPKDIIKKVTGTITKLFPEKQHEGNFGPYTIQNGEIEVDGKNYKLAFWKNTQPESAKGRTVTLSSTRGKHGLNGVTFEEENYKNKEGQSVHNEVIKVSASARVEYDGASDEPVRVTSTPKSIVTDNPVEALDKIVELHKYVDSLVRHAYKGVGDEETLRAYVSSVFIEANRKGIAFKSEVKAEEPKPVEPPKVELDPADWASAIVPSGTQKGKKLAEIGKPALTKLYEFYLEKGFSTPFAKCVEQAAADLDLDAPVENDDIPY*
Ga0153698_135925F094938N/AMKDKPTPTTQEPEVKTAVVDSALKREIYLRLISASAADGKFDLGKLPNAKAVVSQGDHLRGVAELLTQCLK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.