Scaffold Ga0153698_1461

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153698_1461

Scaffold Ga0153698_1461

Overview

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1461 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	16972
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (80.95%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042219	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_146115	F042219	GGAG	MAAAQMVVVVKDSSFMLDEFKVKAESLVAQLERVKQKHDTKWGIKRIEMLVDANLRVKLHQQLERVYNAQRDRDIEKMEKAVAGMIKGYGVLDAWAEDNNIEEKPDINAVEWVMQDKSIMVVVQTHNDAIYYQQFRPELSNRHIWSMEELELLLESEVMKDIIKAKALLPGTRMTRIAAGGITGFDDLPDCDIDLSGELANPLFNFQHAKMMKAPASR*

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