Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1485 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1485 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	16401
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (12.50%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

16401

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (12.50%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007169	Metagenome / Metatranscriptome	356	N
F011298	Metagenome / Metatranscriptome	292	Y
F020140	Metagenome / Metatranscriptome	225	Y
F022862	Metagenome / Metatranscriptome	212	N
F024782	Metagenome / Metatranscriptome	204	Y
F025688	Metagenome / Metatranscriptome	200	Y
F041765	Metagenome / Metatranscriptome	159	Y
F053245	Metagenome / Metatranscriptome	141	Y
F063489	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_148511	F020140	N/A	MTHKFAVVVERTFYDKIQNNSDFYLRVLVLDVIRALAPDEGSVDKYSSDIFYKCAKSIAKEVRMFEDENSFIFYLELSSGYLDDFFQEPLDDFE*
Ga0153698_148515	F063489	N/A	MNKRYIVRDREGAYQSAYNLALGKKQAYDWAMQCAKSVNGVIYYVEGDASKEQEVFRAPEPRRF*
Ga0153698_148516	F011298	N/A	MAHFVKLNVLDPGHDDLVNKTNRQYNTQLINLDMVVNVEQSHVHSLIFTKNNTMHPIRVKENLDEILKLSATQ*
Ga0153698_148527	F007169	N/A	MSYQLQFDFEKPEQKEQRLKGWHDQQVKLDKMFEGKANDYYIYNKYVDEFIDFLPYRLGWGLRSNYKELRWWIKCQYQKFRYGVSDDEVYSLETNIAKYMVPRLQYFKKKGKMGIPMKFLPSNYDDLQDEDREKAEKIGEKEINRILDEMIFAFDYLIDPDKYVTFPKSCSWDIKDKNYFNREKTLEAKQSWDEYTKTCEQLDTRKKQGLQLFVEHMDMLWI*
Ga0153698_148529	F022862	N/A	MKFTPQQYELICKTRDEIRSLNDKQHTLYDNLIKELNISIYAEDWMFDYIYNDSGSIDNIEARM*
Ga0153698_14853	F041765	N/A	MLNHKRIMEDSAAFFNKEVDKVILKVATAKTEKSRLKYLKQMLALRNRLSLEVKMLNDLDNF*
Ga0153698_148530	F024782	N/A	MIEESIERLRAYNKWRTGEDDRTMDEVGIKPSELTADIKNVCDELEKLINMYASRN*
Ga0153698_14858	F053245	N/A	MKNVTIKIGDRDLEVLTDIFKNESDFKPQAQQDLLIIEILKQVLNNPKNEIADIEV*
Ga0153698_14859	F025688	N/A	MKFILNIDGSNAGGKFLENYVGQEVHLDSLYKDIDINSPPLAILKTEDGKQHSVQLIDIRFINEFIFINCFVIQHDDKHGGKALLRLKPVCDLEKIVNP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1485

Overview

Ecosystem & Geography

Associated Families

Sequences