Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1631 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1631 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14004
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14004

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (86.96%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001897	Metagenome / Metatranscriptome	620	Y
F005503	Metagenome / Metatranscriptome	398	Y
F016643	Metagenome	245	Y
F088885	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_163114	F016643	N/A	MTIFNPIWQVKIGGIEYTNYVLANLSITSGRTNIYEQANAGYVNLELINLDQSIIDIEVNDAVSVSLQDSSATFVPIFGGTVVDFGIGIAASGVVGINQSVKITAVGALARLPKALTDGVLTQDFDGDQILTILTDLLINSWNEVPAALTWATYDPTVQWQNAENLGLGEIDTPGSYELAARSSSTIDVYSLVAALATSGLGYIYENAQGQISYASADHRSIYLATNGYTDLSAAQAIANSLFVQTRAGDIRNEIVLKYGANSSSEVTDTDAASVALYGRLAQIINTTVKHQVDAEDQAAFYLTLRSYPQAMFNQITFELTNSEIDDADRDALIGIFMGLPLRITDLPLNMASGTYLGFVEGWSWRASYNSVSVTAIISPLAFSLQAMQWQDVSILEQWNTISGSLNWADALVVA*
Ga0153698_163116	F088885	AGGAGG	MATKSSRDTGTFSFTVEPLELRNLFRLLSALPKEVQDQVRTEAGSMSKRLAGQLMQFGLVSPTPQAKLVMDSITTPRDRLIRVDIGGTKKVGRKYGGKTGKGGKRTNQSQAAAGTLLWGSEYGSHPGVDRAGRRYTNRFKAVANPSGYWITPAVDFYTPVVAKEYIAMVQTLIRANGLE*
Ga0153698_16315	F000403	GGTGG	MSDYMEIINPQTRTAKLMYEGKIVEEYKIEQCDKCSKLMKFDQFGYQKGYGGENVIWFCGGCR*
Ga0153698_16317	F001897	AGGCGG	MAFMDSYEGNKQRTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAYRNQIETEPAGVDYAFGYREAYPEKMRRWMIEDTCTSALMRVMALVMGGTEKATQEVMAQVKSQAPAVEYDYWSTKFGDVPSYKTREEAEQAEPIAWEVTPESAPSCSHGSMRWNQSKPDAAKAWAGYFCSEKIKEKQCKPLWYVLTSDGTFKPQV*
Ga0153698_16318	F005503	GGAG	MTTSEIGLAVLMAIVCILWALMSYAVGYKEGHKEGYQRGKAVGRHAAGQAVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1631

Overview

Ecosystem & Geography

Associated Families

Sequences