Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1696 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1696 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13144
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (20.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13144

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (20.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F026511	Metagenome / Metatranscriptome	197	N
F082371	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_169610	F021092	N/A	MQDNDLRYFQVANQFNRDVVVSFNDRSLEDGVEKMRKFLSKNTGFHRIKLYTNNDLKANGVPRQEPQVFEVSITGKEFDAPKEETKEITGFGINPGYPSAGGIIGVEQYLSKHEENATLREKIKGLELELQYMRDQNTREIDRLRADHELALKAAKDSNQMFSQGLGMLMNRMGVGE*
Ga0153698_169611	F023325	N/A	MRLVSPLIEYLFASKKIKQVGSYEGSYTKSVYMPFTANALIGTSYYMQPDEVLDSKNNDITAIEVVDSSTNVTAPTIPATDPLSPTQAAQGYFYFCNLKRDVIASVPLYSLIRRLNAGKVQFCNFDDPIVWQNCFIQFDSLGTAITTAHSVWLRVTYSPVEN*
Ga0153698_169614	F016262	N/A	MFKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTFLIGAGATGKLISDVAPIAVGLLLQGQSNLFAKEAGKGMIAQAAGTLIKSNFPSLGITGDGYSDSVMMSGTLDTGVDNPMISAVPSSYQTDETSGDAGEMDY*
Ga0153698_169624	F025232	N/A	MENVNEKILADYRAIVSRLDIMKAEVDQVNRANWKLRKAFNELLDLYQEELSRRESTEDSQEVAYYWCEKAGILD*
Ga0153698_169630	F082371	N/A	ITQDTFNYLMNMPKTERLPAIGMIAKKSVWITYTGGKAEEWELKEGFYTNIFFYVIQQITDLMAWAAEIAGDSFLFYWVDGIFLKPTISKKKLEEITGIFAEQGYYFKYEKVENCNIVRDGDKLLINMIKNGEEKPYQMYDRNLARNFTKVLQALENA*
Ga0153698_16965	F026511	N/A	MNTTTDCQTIGEATMITSDCIAIAFKRPTGSNPVNVIGYDLADGETLTISQNVGDIDRTQYTVYFGAGAGDNICHVFRTLILD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1696

Overview

Ecosystem & Geography

Associated Families

Sequences