Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1719 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1719 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	12768
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (25.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12768

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (25.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012014	Metagenome / Metatranscriptome	284	Y
F014839	Metagenome	259	Y
F021096	Metagenome / Metatranscriptome	220	N
F053984	Metagenome / Metatranscriptome	140	N
F057210	Metagenome / Metatranscriptome	136	N
F082389	Metagenome	113	Y
F100413	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_171913	F053984	N/A	MENQIIPTENAAVSVANEITNFAELVAKSTNLDKLDQVLTLTAEYIELEKPAESFRGLYIGTQTMHLTDKVTGEEKSMEAVRFLINKQVFINAGVVLVNEIKRAAINVGTPVEITYLRKEGNTKIYQVTLLG*
Ga0153698_171915	F100413	N/A	MDGLTLKRTPDAIKWIQDSLEISGIDYVLKHGTYTTTIEHSLGTIKLMLNNFQNRVFCASQMVKKDCKNSAVGQEIMKSTYQKKNYDSHPQIDNIRYDSCLNIDLSSAYAYCLFNNGLITQKTFNYLLKLPKMERLTSVGMLATSHVKYFYSGGKCIDFKPFREPTAQIFFFLIDEINYLMQDIKWILGNDFIFYWVDGVFMKPTTPKKKIQDVENLLINLNYKYKYEKVENFSVNRIQDKVVVDMIKNDETKRYEFSTGQSGRELGKHIAKKAFQDFKD*
Ga0153698_171921	F082389	N/A	MAIVKRKDKNDKPYFLNTTTGKRASEASYKKSKSAPISKFKARKGKPSEGVCSNYGAELKVKRTSAAGRGLRKCR*
Ga0153698_171923	F014839	GAG	MSDKLMKLEVENKELFTRYHKLKKVFYELTEHHEELRERAGLLPSRYDWVEAAGLLDDAE
Ga0153698_171928	F012014	N/A	MNILSKETLIGAAALGAGAVAAKVVQNKVVPMVLPTASDNVKNLITLAAGILTPTIVKGPIGTGLGAGMIATSVAGLVDPFLKSAGITGYGEGYMGEVLMGEDISAGAPLMGAVDTFSAPSTDFTGGDAGEMDF*
Ga0153698_171931	F021096	GGAGG	MAALISPIINYFLTNNLCKDYTAIEGEMSTLVTLNFPNTGNYQQSYYMASQTMLDGENCTITALEIVPSTELGTLPTGQTNVDASILPNGVFYVANLKRQIIAQIPLTTMVRTNNGGKPTFTFFNDQVWQNCYVEFTSTGFTTTITPLTFRVYYVNKQKN*
Ga0153698_17197	F057210	N/A	MNTIDQQINNVMAAISEIVLNTENCDNLTKMDKLTHDSAKIMVKEVHLCILRHTYRIDNIRHNYDTMEELL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1719

Overview

Ecosystem & Geography

Associated Families

Sequences