NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1747

Scaffold Ga0153698_1747


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1747 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12339
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028807Metagenome / Metatranscriptome190Y
F082694Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_174712F082694N/AMGTKSSRQILEAAIASHRSAQTELAGVSIYTGDGADINVLPKAIVLCDSARAPNDMPQGLGNYSCGTRVTVFSSADDNTLAEHRARCAAVAGAMQDLTAIQAVFVAGGDALCYDVTPQSEDEGVNERSWASVFSYDILIVVNPQP*
Ga0153698_17473F028807AGGCGGMITYKISMLGATLADPYQLLAAVFPQRNGEPAESDGCAVTVTFDTPQTPADLGPLVKVEVIPNP*
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