Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1780 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1780 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11881
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11881

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (72.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F012113	Metagenome / Metatranscriptome	283	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_178010	F005702	GAGG	VIIFLVVFFGLLILQGVRLLAKHIDQQNYERRRFYLSVAADLDRLDKIIAENKTKPDLITSEKWAGRN*
Ga0153698_178011	F005846	N/A	MTSFPLPARPVGSAVPASHIEFAKDTAIEGKLNGWRGLFDQETKQGYNRHGKFASNHNLMADMILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKSYAERMKEIEHLEAVTFDVQPNKLLRFVRLAHYKINSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPSYCSSAWQKQRIRW*
Ga0153698_178019	F012113	N/A	MEQILSFIQSQDVFAWVGALVALLSAVIAIASLIPGDEPEATLTKVVSFLSRFSRK*
Ga0153698_178022	F035669	AGGA	MREQQLNELQGTSILTKSFFNKLIRRIECTKPLAGSGITISEKENGFEISGGGAGSVAGYSAITLNVCSNGTPAQIVVLGSPVEE*
Ga0153698_178023	F041645	GGTGG	MASVIIGSSIDSKVLQRQNFNKEPNGLETIIEAYAIKTSNRDTIVPEKNTLHSAFSSSAKKYTRMVVESVTTEEQDGGITQMLVTFVGLTTSTGLPPPIVRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLARNTGLGRQQIFSPTIKMPAVINGTTMPVDPRTAFFNAPKSGFGGGAIIQYNGYCVLSMSCDRRGLFLVARNTYHEVQQVAIVSQGAFS*
Ga0153698_17805	F033350	GGAGG	MSVDVEVPKVKWSMLEWKTPEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0153698_17806	F023833	AGG	MKSHSDQVQDIINDAMSKAAALERGRCAELVQKLADGTEDQVIQDILNEVVVALRRLTDER*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1780

Overview

Ecosystem & Geography

Associated Families

Sequences