NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1787

Scaffold Ga0153698_1787


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1787 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11769
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (58.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006658Metagenome / Metatranscriptome367Y
F034175Metagenome175Y
F093779Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_178712F006658AGGAGGMDNKAKEPFGFNEVSTGELIDSPKFQEEQSKKNTFLERLNSPEMIKMREDLAKAHEDSIKKSVGWYHMLSAEDKYRAVEAFCYIICKAEREGTSHRGLMSELGVYPEAFFIDGLMDIHNALYVEYQEQDSRNWKEIKEDMKTLENIVDK*
Ga0153698_17872F093779GGAMKVEITQDITGTGDYHWILYTGPEHIDEYTGYCYTLGECFEMIVKWKTLNAQNYYE*
Ga0153698_17879F034175N/AMIEYPSNENEMIYKPPVEARVLKLEDENVGMTNELYELQIEIDMLKERIKTLENLILGDGK*
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