NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1827

Scaffold Ga0153698_1827


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1827 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11374
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011074Metagenome295N
F020348Metagenome224N
F048948Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0153698_182715F048948GAGGMRKLTAIWYIITHKAYFVAVCKTGFNGDEMTTIGNYTYSMAETLINKHIEDVNNYIDQEDAIDEANDIINGIL*
Ga0153698_18272F011074N/AMQLVGINVIPDKVKLDILEDWIRTEYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEIRKMIPQERVEAIPHLTDLEIIDYSYQEYKLLENRTFDKVFNPLSVFTKLNNTGIKKWTKEDGAVAKKKLMEIITYKANKMDILSAKQYRDEWTESWLKNQARAVAVALFFEEQIKFGKVSFS*
Ga0153698_18277F020348GGAMEIEHRNYLDLHRPNYEMVQNGYVRNIDLDILKMYEHIYRKYMSADFILTVWCSHCIFDMIKRLYEWYDAQPKPKKKKNG*
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