Basic Information | |
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Taxon OID | 3300011335 Open in IMG/M |
Scaffold ID | Ga0153698_1886 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 10762 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (85.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hwacheon, Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 38.0874861 | Long. (o) | 127.761456 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003067 | Metagenome / Metatranscriptome | 509 | Y |
F004430 | Metagenome / Metatranscriptome | 438 | Y |
F006789 | Metagenome / Metatranscriptome | 364 | Y |
F007027 | Metagenome | 359 | Y |
F012572 | Metagenome | 279 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153698_188612 | F004430 | AGG | MAKGYEVLQMLIPNGGWYISGDEYEGIQFLDCEPITKAQFTAGVTQYEAWKAQQDTQAQADKAALLAKLGITVNEAKLLLS* |
Ga0153698_188619 | F006789 | GGAG | MALTDEEKAFLIKIGQDLPKEIKETQPKDTTTQKVEE* |
Ga0153698_18863 | F007027 | AGGCGG | MSESIRFECRSCKKVTEQIERIVTDNLPPNVKVLQCKVCSKMSVCLLVNYADV* |
Ga0153698_18865 | F012572 | N/A | MPFRYFNDYIGDTMSDQYELINLQAMTGKLFIEGELAAEYKVEQCDKCAMITQLDQFGYQKSDPKENIIWFCKGCR* |
Ga0153698_18868 | F003067 | AGG | MSQAQLYVALLLGIATLGGLAAGLVRHLVKYYLSELRPDGNGGHNLRGRVDRIEQRVDKIYEMLLEDRLSK* |
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