Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1931 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1931 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10315
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (55.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10315

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (55.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007579	Metagenome	348	Y
F018918	Metagenome	232	N
F028783	Metagenome	190	Y
F034555	Metagenome	174	N
F047528	Metagenome	149	N
F091913	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_193111	F007579	AGG	MATPTSEQINTQIGNATRELAPNTTWRYYEPGDSYACLVWMDDPALQPTEAATMAKATELATALLG*
Ga0153698_193112	F047528	N/A	MSKARRQIGDQSTKGAALGLCVYGMVKGNFDPMLIALLVPIISTVFAWVSTKIGDPDLACLFIDKPDA*
Ga0153698_193113	F028783	N/A	MPRPYTAVKAPVASGPLEGNDEFIRQVIKRAGGSLWNNGSFVIRDIRTKPGQLSNHARALATDFSYRKMTDKGIVNGRKVALPFIYKLLENADVLEIELCIDYFDNRSWKCDRATWLKGKWSGGDWFHLEISLAMASSANRVKSAFQQVFKDMPQTL*
Ga0153698_193116	F091913	N/A	MEFNELGQPVIQLTEDDYKNCFIVLELKRLEVQKRQSKTTYEASSLMTNAIEFCGALGEQAVSNYFGCPYVYKPYSQDAHDVLGYEVRATYYDNGQLLTHASDDKHYGDKPGRYILVTIDQKTLTATIRGYSTLSRCNERTSNYETGWRYPCFAMPQSQLWPIDMLPANDELIAFRQTKAVA*
Ga0153698_19312	F018918	AGG	MAAYSVQQKYLIDNYAVLVLLTNADPLEVGQSFTVTNVDATFNGTYTVFALPQYYFTGVNTEGFFNYNIEAPILNQVLYAKTADNVDIVPATGTLTTTPVCTWITAGEIEDWLGIGTATAADTAFLTQCALASNSFAYRRRAEAGYRNESLTTVPNGSVSLGTIMYGGALYRQRGGVTDFATFDGLGSGGTVGLSPMVKQLLGVDRPAVA*
Ga0153698_19317	F034555	N/A	MQIEGVQKTLAELNKFDKVYRRQVTKDIKGAGQQIVNTARELIGTEPPLSGMVRGKLIKGREVYWTNKTAKAGLKIKVGRRASKGGTVQFKDKFDAETNPRESHSVTFGARPYQLMVAQQTDAAGAIYDHAGIKTKNTNFVNNLNVQVGNQPRAIDPAVEKHRYTVQYAVKKIVDDVADVLNKKLKVRYGN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1931

Overview

Ecosystem & Geography

Associated Families

Sequences