Scaffold Ga0153698_1935

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153698_1935

Scaffold Ga0153698_1935

Overview

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1935 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	10301
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (96.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004667	Metagenome	428	Y
F015866	Metagenome	251	Y
F104700	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_193517	F015866	AGG	MKFYKAIFDSRRFQFEAYAINETLAKEHLKKGLNNHAKDYQMPLDWWHEYGGDIYVVEIEIGSPSFNSCYRDNHLISEGK*
Ga0153698_193520	F104700	GAGG	MKLETISRGGFNGLYMTHPLGREKFGYFLITDSMGEQPPIVGEKCAIGWYTDDAQFLGYLDVDQWIQL*
Ga0153698_193525	F004667	AGG	MARPPKIDTVQFRRKLDNPKRQILLTVGQGNISQGFENLLALYQHLHSLGYRIDEPFERVGLVTNHVGNKQQP*

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