Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1036 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1036 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	42654
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (23.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42654

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (23.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034850	Metagenome	173	Y
F041184	Metagenome / Metatranscriptome	160	N
F047481	Metagenome / Metatranscriptome	149	Y
F051129	Metagenome	144	N
F052371	Metagenome	142	Y
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_103613	F051129	N/A	MTQEDEKFIKENIYNFECVKAGFMKNLPLHILVGYEQIYRKYLDGGFILTSWCANCVADMMKRLSNYWDEYQATKLIDVEQPIQEPPKKKGRPFKNKQ*
Ga0153703_103621	F052371	GAG	LDLERFKYARTSEKLNTVSIALVVDELIRGMHKLGIKGDKIPNKEELSVMYKSIVEEYPNIKLGELTLAFDLASKGKLDMEAETYQNFSVLYLHRLLRAFARYGMQKLNDIKPKEESKWNPRFISDDEKIETAFDCFKKFRQWDNIVFGVDVFNILHKRGSIIVTPSETYEKVLTAMNEKMFEGSRQDKIDVKNRMKDEDYMEHQCYRMAVSEYFTKLINRG*
Ga0153703_103629	F093533	AGCAGG	MYYERIEMILEVKGEVRATAFPLRNHESIERIRHQWYYFYGLKSVKEWEIYITQVSKMKNSTPHRIEKPFPYLIKSQNNESTESESTDINCESANPSGGLEQVVGKRQSKVL*
Ga0153703_103633	F034850	N/A	MEQDLVLGESDEVEYVEEAEGYGYPDYISASVEVLTMLESANPMTKEEVEKVQELKKLCFEMLEFSVKSMHETLFNNDIDC*
Ga0153703_103639	F047481	GAG	MDSKSIGMCAATILIKVWADIAISEVGVVVAILAGISTIVYNAYRMYKEIKG*
Ga0153703_103645	F041184	N/A	MASDFRPGKLDIQMWRNDTWKQVFTLLADTTPISLVGATVYIQVRKGCGGVLALTLTNGSGVTIGGASNNQVTVNKLVNIDKGNYVWDMQVTFADLTVKTYLEGDFIVYDDVTKP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1036

Overview

Ecosystem & Geography

Associated Families

Sequences