Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1146 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1146 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	25520
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (69.70%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25520

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (69.70%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F020635	Metagenome	223	Y
F026827	Metagenome / Metatranscriptome	196	Y
F079653	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_114612	F026827	AGGAG	MKSTNPMGNKEINQKRGPTTGNVATGSKRADFMKEKSSTNSERSTIANMITDALGMRGKGQAGKTNPALEGVHERTGKAANPTANGSRGPAINGRSIKAKR*
Ga0153703_114614	F012328	AGGA	MTKKNLNPPATANVENPWDESAPVTPEEIIAVAEQVAGIQPKSTSNAEYDMEGLMTDFPTAKDLERFVFDETGVVLNLKGRANKLKYQVAMDVLNGAEVDPKFIGGDNPYIDRTELVPVEDLKPVPARDKNLPDPTELQNIFVSNAIPHTDFEYRMQDRKVSVYFRKYKSGEISYEIVGPVDQRPHGMKLDKYGRERPEIIKWVDPRTGEQVIVRSDGSLTPQGRKLRGLMQSFKVNNSNQWDTWIDREFVSMGGASITDVWDLSK*
Ga0153703_114620	F079653	AGGA	MFICAIEENTMILCESHAKAFERAAMIANTPHSIIEMEDEDIDGHTCMACSLQDELTRPRIILPGDIQ*
Ga0153703_114623	F015856	N/A	MINNDTVDFYNSRLTVDISQPSKLTTSQKDQVRHYGSLAENLLKNKDLAMFVHHFKFSLADELASIRSHQPDDNARRIAISNELVGIDNFVNSLKRAVYLKNRIGNTEEVPST*
Ga0153703_114626	F001299	N/A	MSNNQPEYLDDNDPEKDLNYMRQDHGGMITNHNGIADKLLQNDDLYKSMKGDWQRTNANKSGNIIVTTGREDGKFYIKREQQNTEAIKQAVRNYRSAAEAGVPDPLAPIGEDGKLTFKWMDLPQVIAIRISDQYFDGIPWNALKNDRTLKAQFYRVVETEYPEYICFPGGKLPIPIAVPYPTKKGEKKYFRGH*
Ga0153703_114630	F020635	GGAG	MEFTLKQLSWIVIGSLGIGGTGYLSMNEKIDALDKKVAVIHNNSEHQNKSLERIESKLTGIKP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1146

Overview

Ecosystem & Geography

Associated Families

Sequences