NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153702_1003

Scaffold Ga0153702_1003


Overview

Basic Information
Taxon OID3300011337 Open in IMG/M
Scaffold IDGa0153702_1003 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)95722
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (55.94%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NamePaju, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6518694Long. (o)126.72164723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006099Metagenome381Y
F056418Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0153702_100356F056418GGTGGMRSESRSSLYYNAYEYAMTWQQDEIGCIRSLDQNKMLSHIRMRMDYEQSRNSHYQRYNEKFESKFTTRCRDNLEGMRALLAAETHPKKMVFFNNFLTVYTNNLGLHGRLMACDWIESVDLKRAELNLPPDTILLKNPQYQYRTYFRGRSLGKTQKARLAAWVTTQGDDIAASKSLQAFLNIEISPKQMYWWRGDATESYYYIEHNSLQYETMLSMICPGMVRKTLPIVKKQ*
Ga0153702_100371F006099N/AMTSAKILYLARYRVPHAIMSLQPEFTQHLIGVDRTCIASPVPKDELWEVFEKHGIDTAKFDYAPDSEIYRIYPEVNDWVFEGDYRTYWLRQQAIKFAFLDYLDYDLMIMHDCDCLLIKDYEPFKDGKLNFMVLENERHSWGYYESIKNALGFDRLTPHCFISEFVPVLKKDFNDLVKFLEQTHNKKWLNAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWAMSRQDITMEFQRRYHYDDMEKIGDFDPTYHTAVCDAVPDLSRSLQFDWDKKEIPKFDYYMDKIRERLARHT*
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