NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153702_1075

Scaffold Ga0153702_1075


Overview

Basic Information
Taxon OID3300011337 Open in IMG/M
Scaffold IDGa0153702_1075 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)34945
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (13.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NamePaju, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6518694Long. (o)126.72164723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012345Metagenome281Y
F067422Metagenome125Y
F103264Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0153702_107518F067422N/AMAKQIKRLSKNFQTLIFGIAICVTLFSCSANYHVLRAIKKGYRCDETSDTIQVSTIDSIPYVLRDSIFWEKVIVQKDTIVRYKASFVPKTRFLTRIEYKYKTKYIKAEAQKVKYQNKYITKTKVNWLFVIIAFIVGFLVRLTLSETFRGRLQLLTKLIK*
Ga0153702_107525F012345N/AMKYKLTYKVGLATVQEWIFTSKSLCYWKKMDLIETGRFNMGSFYIEEFKF*
Ga0153702_107531F103264N/AMTKEHKLVTLSAILPVLADFIEDLNDQYVFKQDLKRKANILADEIRKTDYKVLQVYGEKREEIYSQQVDLQLLFRQWIEETIKFD*
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