NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153702_1083

Scaffold Ga0153702_1083


Overview

Basic Information
Taxon OID3300011337 Open in IMG/M
Scaffold IDGa0153702_1083 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)34308
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (78.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NamePaju, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6518694Long. (o)126.72164723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F001799Metagenome / Metatranscriptome632Y
F002487Metagenome / Metatranscriptome554Y
F056570Metagenome137Y
F063703Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0153702_108310F056570GGAMKVTTYAQNARMLWEAHRVIHQQNMARLAELNRQADQQQKAQEIKTQWVKVNQVDIMA*
Ga0153702_108326F001799GGAMDKQVVAQWAKNLLNDDFFKEVLNNLKNEQISVIINTSAEESDRREDAYRHIKTLELITGHLEGLASETVIREKKWKIL*
Ga0153702_108350F063703GGAGMNTQELRRKARQLYNNEQVPTKVNQYNQRKWVRSVLKLGDKWLVAKQIGRIQ*
Ga0153702_108351F002487AGGAMITREDAIKDLSHTLYCCYCCEPKTYGSCCGENHFVEFADLYEEDKEAMIEDYLKEE*
Ga0153702_10836F000166GAGGMANIPTQDDARIFAESVKKWQQVLSLGDWRIEKGIKPAKNAMASVEFTDNARLAVYRLGDFGAEKITKESLDKTALHELLHIFLHDLMCVATDPKSSDEDIEMQEHRVINLLENLLTKDSNGLT*
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