Basic Information | |
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Taxon OID | 3300011337 Open in IMG/M |
Scaffold ID | Ga0153702_1562 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 12406 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Paju, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.6518694 | Long. (o) | 126.72164723 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013412 | Metagenome / Metatranscriptome | 271 | N |
F039136 | Metagenome | 164 | N |
F058715 | Metagenome | 134 | N |
F059002 | Metagenome | 134 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153702_156221 | F039136 | N/A | MTIEIKYTASVYTPAGWRGVTITAKATKTSEKMALVVEVLEINGKSPKSDMSRTGASRQRFNGSSISCREVGAKKRLSACEILN* |
Ga0153702_156224 | F013412 | GGAGG | MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLSNGKPYAQRVQFRSFDPDDMDAVLLLTEGTHVMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGYES* |
Ga0153702_15626 | F059002 | N/A | MNIYNEIKSGISRLFGVHQTVEIKKTPRTLKSKRINKRGRGRPKGLRIPREIVDAVLQAEKSLTIRQLAAKYRVSCFWVWSVRAKKLRLKR* |
Ga0153702_15627 | F058715 | GAG | MSLLEKLGLTKQSMEKMLGVVAVAKKTKIKRYRRYETVPADIREAILGENPSYTCRELAKKYGVSASTIYDIRESKSKIE* |
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