NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153702_1757

Scaffold Ga0153702_1757


Overview

Basic Information
Taxon OID3300011337 Open in IMG/M
Scaffold IDGa0153702_1757 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10192
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NamePaju, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6518694Long. (o)126.72164723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005633Metagenome / Metatranscriptome394Y
F009603Metagenome / Metatranscriptome315N
F028809Metagenome190N
F031459Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0153702_17571F031459N/AMQTDTNSSSGVGISLATAAAAGAVSLIPQLTQWFQLGAAVLAFIAAAIGLYKAVKK*
Ga0153702_175710F009603GAGLTLLQALTAKLTVSANTLESGQLVRSTSSSDVSVEFAEPGKGSASAGEMLEMWESLLSDYDFAVTLLAGDGISSPSDLQIYNKMLGSVLVATTRYYGDFTQFRREAITRMS*
Ga0153702_175712F028809N/AMLNCQKPAGLEALRQNRIALKAIERQTGFEFLGISNDEPSRIDGFIYDPAKGILVGSYEVKTRDYGLTKLQTTYGNRWLISWSKLQAALEISKHTKLPFFGILHLHSDDSVLMVEIFNSNASWAANHQATDKTVNGRTERVALIDMTGAARYQIKSGQIAEELF*
Ga0153702_17577F005633N/AMRLATTVAVDKTGKSKLVSGPEVSADLQRNSFNTATIPEGGKLLLFMQGSLAPKVRKG*
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