NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153699_1162

Scaffold Ga0153699_1162


Overview

Basic Information
Taxon OID3300011338 Open in IMG/M
Scaffold IDGa0153699_1162 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)29419
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5955556Long. (o)126.817072Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008495Metagenome / Metatranscriptome332N
F018136Metagenome / Metatranscriptome236N
F023103Metagenome211N

Sequences

Protein IDFamilyRBSSequence
Ga0153699_116213F008495AGGMFECLPEYHGLFEMVDYCKPLYPQNDHSGFHRIINLQIWPDLHEDFCASELGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIDVRDVITIAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDAQEVVTINTSTSILASALRKSWVHISDSPKHDFKHPNQRRIERKF*
Ga0153699_116218F018136N/AMQGALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDIADLKVKLHAVRPQYAFVFGLLRDGPVSLSPNERHFERSVTITVHAALFAS*
Ga0153699_116222F023103N/AMAKFKFESVKFEQIMRDYAEIREVTIPDAVMLNARLLCVELARRTQPFGDEQTAGTTRVKNDIGKIIKNTNQLDEYADRVGSQKIKARLKVLIKSGRFDIVEIILRNIGFLNKWTGMEVIDASKIKSVHNEARNKTTGRTKSRGSKLFIASVSDQETYIAEVQKRVGMSKGGWANCATQLKMVNKGSLLSTFPKWVIKAMKSGSGSVQDMTSDLKNPRVEMTNNIPWASNVIPKSEEEFAKAVVVTKMKKQLEAILKKRQKTTKET*
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