NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_10236

Scaffold Ga0153700_10236


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10236 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)29664
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003067Metagenome / Metatranscriptome509Y
F017130Metagenome / Metatranscriptome242Y
F020906Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1023615F020906AGGMMPTSAQVSVGTTPTLLVASTGFDQTVWLHNSGGGIVYLGDSSVTTANGYKLDNGDKMQLLVGDHEGLYAITAAGTNTVGVLKQIN*
Ga0153700_1023617F003067AGGMTQAQAYMALLLGIATLATFMAGLVRHLVKYYLAELRPDGNGGHNLVGRVERIEVRVDKIYEMLIEDRLAK*
Ga0153700_1023644F017130GAGMGYAQIHTPEGWVNVEDIPMIETVNCQLCNEPTQASDITITARIVEGVVVAGTWSCNKCKAVNG*
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