Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_10297 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_10297 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26932
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (82.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

26932

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (82.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012199	Metagenome	282	Y
F098944	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1029722	F001915	AGGA	MEWTLAHPLHDVDDIVDMADSVFGTETDGILTRDRAVFRKHVTVATTVQVFDKSKEFIAVCHEDDKLLGYCWFDRGGYTTYANEEISNAKFHHLDLKLSPRLRVRLINEMIDQHILWAHQWGIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYAWIRTEKGMQCLTK*
Ga0153700_1029723	F098944	AGG	MFDKIRPEGSTVSSEDIKQRARDYAKAKRAQKKAMKLATGKIEPKEAIETVPVKDEFDMTNFTPRSQKPMAGRPKSIVNKVTEYGALFNKLNDERTAKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHVQNVTREDEGDADDALNDFMESLRKV*
Ga0153700_1029726	F001059	AGGA	MATYDIDALKADLPTAKELAQFVYDKVQVSLDLIGKPKEEQYVVAKNALEGKKIPSEYQTSDNPYVDKKELIPVDEIAKLPKRSIDLPDPESQVHFFGATNMPHPFDPQSDKKVQIHFRKYDNGLITYQIAGPLEQIEVGSRINKYGQTQPERISWLDPRTAEEVLRRPDGTFTEKGRGLYLYCIGEKGSGIWRFIDKDLASVSAKNITNPWA*
Ga0153700_1029727	F006264	N/A	MEDPSTIFRNRLASQSEACARKTLEWLQKDLQGSHKLEPEEVYYLAYAAQILLHIRDSYGQE*
Ga0153700_1029729	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKVNFEFERFSEQDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMISPVRNPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKVDVNLEGAMQEAMSGDESEMMQEPTGEELQDAIRNNTIYRAKYKLTGYETTLRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWLRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPMQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHVFEFQPMQGNLGYVESAMARFESDKMAMIGMTSPTDTMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDAIYIMWKTLIQYSDDFNIQQLAGTCLKGQPFLDAISIENFEFIDRRMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMVPPEVPEMFVKVRRPFEDTLRVLGVKDVDAYLPTFEEAIKIIQAQASKGPSAEQQEIQSKVALNQAKTEESGSVTALNIKKAEDIDTDNMFEALAAKRGKLTAVQVD*
Ga0153700_1029733	F000857	AGG	LATALFGNIWSKAMNEDEHVEVNEDYYLKGNLEAGVDGVFRQNDKLFNEVKSGTWSQTFKTNNIDYKVGAIDGERYVQYDQKNVEAIREYCKGRREFYQMIGTTDNPFFAGTFEAMNLPKCFAHEISGKWFNNRPWELIKQDKADKIKFYAIVNQFYSDFVCHPSGKIPLPYNPLVKTK*
Ga0153700_1029739	F012199	N/A	MGFCPDVPSNALGPNEYNIGKNVEADVRTIKKIFGEKEICSTITPQPVFMEGGFRSETSWVYVVATRDSSNQGKWWMITATGITNITPGVGANPAAYIAGYVNGINITTAWVGSVFFINDTLGNPMYFLPTANEITVFSDAGWNYEPGVTSVTAGFVRNFCSPNVGNILIAGNLTKVIGGTTYNYPTTVRWSQAFAGSGVPTTWEPTLSNVANEQEVPVRGPLIDGFFLGANFYVCSYWDTVVFSPISYQNSTAPIFGVRLLNQGRGLLNNNCWTNTDGNVYGIDARDIWVFNGSEFASLANQKVKDYFFQNLSPVYANRLFMVNNTQKNQIEIYYPDLTSTGWCNKMLSWRYDLRVWNAHKDIANAVMG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_10297

Overview

Ecosystem & Geography

Associated Families

Sequences