NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_10439

Scaffold Ga0153700_10439


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10439 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)20558
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (13.04%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019993Metagenome / Metatranscriptome226Y
F021092Metagenome / Metatranscriptome220N
F023325Metagenome / Metatranscriptome210N
F025232Metagenome / Metatranscriptome202Y
F026511Metagenome / Metatranscriptome197N
F028461Metagenome191N
F029051Metagenome / Metatranscriptome189Y
F049572Metagenome / Metatranscriptome146N
F086850Metagenome / Metatranscriptome110Y
F088542Metagenome109N
F095365Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1043910F026511N/AMNTTTEIQYVGEATMVTSDCIAIAFKRPTGSNPVNVNGYPLADGETLTISQNVGDIDRTQYQIYFGSGAGSDECYVFRTLIIDDYRNG*
Ga0153700_1043915F021092N/AMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGVEKMRKFLSKNTGFHRIKLYSNNDLKTNGVPRQEPQVFEVSITGKEFDPPKEDSAPITGFGVNPSYPSAGGIIGVEQYLNKHEENATLREKIKGLELELQYMRDQHSREIDRLRADHEAALKAAKDSNQMFSQGLGMIMQRMGVGE*
Ga0153700_1043916F023325AGTAGMRIISPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFTSNALVGTQYYLQPDEVLDSQNNFLTTIELVDSSTNATAPTIPTTDPLTPGQASQGYLYICNTKREILATLPLYTLIRRLNAGKPQYLYFDDPVVWQNCFIQFESLGTAITTAHSVWLKVTYSPVEK*
Ga0153700_1043920F095365N/AMEKYLQAAYEYYRQDVKENYLSYEDFKKSLGAACPPCKPGSKLPWWVYLAGGAAVGYAIKK*
Ga0153700_1043923F019993N/AMNKQVKLLLVAGVGYLGFKAYQIYTAISKLSFAPTGINFSIIKERGAIGGTLFVDIINPTAANVKVDGFTGTVTTTSGTLVGDYKGAAMILKPGVNNVRIAWGSRSTTTLIPLALGIVRGQYPVLKFNTVFNVKGFPIPTSFSMDTKAYKPTFI*
Ga0153700_1043928F025232N/AMENVNEKILADYRLIVARLDIMKGELTELQRSNWKLRKAFCELLDIYQETLDRFDSIKDRSDVEYEWCEKAGILD*
Ga0153700_104393F086850N/AMESKKIKFGLGEYSKPTPKKLRRLGDGLLLVSSIVTEETMVDKPALASVALICGVIGKFLTNFFSAE*
Ga0153700_1043935F028461N/AMKKQNAATLFKNPQLQESIIKQYKEAGLDFQVKHSNYNTQIIGQESIIKFIQTEHHTRVFVAYNKIVKDLKASEKTVEILQGEWSTENFDSKNGLRPCKYKSVLNLDITSAYPYCLFINKLITLDTFNYLMKLPKNERLPAIGMIAKKSVWIDYKKGKADTWDVKAGEYANIFFYVIQQITDLMAWAAEIAGDYFLFYWVDGIFLKPSIPKALLQEITGIFAEQGYYYKYENVKNFSVIRDGEKLFINMIKNGEEKPYTMYDKNLARNFTKVLQQLENA*
Ga0153700_1043936F088542N/AMAKKKSAAPKYVDRKYNYPKGYTERGKKKTGFMNSKLGAKLFVEANLEKIQKGTLPFEKLTTREKRIYRGKTSNTLQNTYRFGKDTYYDPTGTIRKILDNVPALKGKRDLTNLLSKKDFEERFNQNINPTKGKLKDKERSKWLEFSSSLYDFNKGEKKQFYRDESGSLMDIVTKLQKARKSGREVRVIDTDGSIKTGALAIDRMRSFEADKLKEFTDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNQTP*
Ga0153700_1043937F049572N/AMENNQTLARVNDVNAAITPEMLEASSNLSKLKTAINLSPEYIELAKVGESFRGIFWGFTEITVNDQVTGEQRTIPAAAFLVEKTIRINAGVALVSECKKAGIDKGTPLEVTFKEKKGNLKLYSLTLLG*
Ga0153700_104395F029051N/AMALSINTTITTDEGFDVTDAFGYLNIFILAPNSNWVNLSYFKSESDWATGKSPLNVSTLPNQVQTELTSNEFWSTTLALTIHEKCQTAIEAITGAGTVTILTA*
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