Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_10506 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_10506 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	19144
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (18.60%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

19144

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (18.60%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F012014	Metagenome / Metatranscriptome	284	Y
F014839	Metagenome	259	Y
F021096	Metagenome / Metatranscriptome	220	N
F031033	Metagenome	183	Y
F040589	Metagenome / Metatranscriptome	161	Y
F053984	Metagenome / Metatranscriptome	140	N
F057210	Metagenome / Metatranscriptome	136	N
F062696	Metagenome	130	N
F064517	Metagenome / Metatranscriptome	128	N
F082389	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1050613	F053984	N/A	MENQIPTPTENAAVAVAGQITNFAELVAKSTELAKMEQVLTLTAEYIELEKPAESFRGIYFGTQTMHITDKVTGEEKSMDAVRFLINKQVFINAGVVLVNEIKRAAVTIGTPVEITYLRKEGNTKIYQVTLLG*
Ga0153700_1050616	F031033	N/A	MAKNVRIELTADELKLIRDTCPNDFMNLIIANEWMKGMYTNDWEQNERLQIVRLFFNKRRPAAPSEIKADKLGQTKLL*
Ga0153700_1050623	F082389	N/A	MAIVKRKNVSGGTYYFNTTTKKFASEAAYKKSKSAPISKFKARKGKPSEGTCSAYGAELKVKRTSAAGRGLRKCR*
Ga0153700_1050624	F014839	N/A	MKLEVENKELFSRYHKLRRAFNELLEVHDNLRERSGLDYSDKYDWCEKAGLLDDVE*
Ga0153700_1050629	F012014	N/A	MNLLSKEVLIGAASLGAGAVAAKVVQNKVVPMVLPTASENVKNLITLGIGIFTPTIVKGSVGTGLGAGMIATSVAGLVDPFLKSAGITGYGEGYMGDVLMGEDISAGAPLMGAVDTFTAPANDFTEGGAGEMDF*
Ga0153700_1050632	F021096	GGAGG	MAALISPIINYFLKNNLCKDYTAIEGEMSTLVTLNFPNTGNYQQAYYFASQTMLDGQNCTITALEIVPSTELVTLPTGQTNVDSSILPNGVLYVSNLKRQVIAQIPLSTLVRTNNGGKPTYVWFNDQVWQNCYVEFTSTGFTTTTTPLTFRVYYVNKQKN*
Ga0153700_1050634	F040589	N/A	MSIAQTAILATALRPRSSEGAAKAKPTSISESIAQKPIQWLVVGGAVLYFGSKAIGKYITTAAERKKEEAETTTSTDNPWSASAFLGQKIPVGTPLLTAAKAYTEATKVFNALDTYFVDDADIVVGVFAALPSQVQVAQVVKSFEAYYKRNILEYLKSGKKTFDFGTGGISSELYNRIIENVRRKPKF*
Ga0153700_1050636	F064517	N/A	MARTRTENLYYGKSQQIEADGCFAISFFRPSTSNPVQVNGIPLEAGQTLSIKQNVGDEDWSTYEIVFYTGTSTNEMHVTKIMPIK*
Ga0153700_1050639	F062696	N/A	MKTYGTIRIFCICIVGIYLNSCSPQYRLQRLLKNHQYLYENFRYDSIRIQDAVVQDSLFFFTKEKDTLYFNNATIYRNADTLRLVQSCPPCTTTITKQILQPTEKYFKEKRYERSFRQKLEDAIFPFVIGMLVCALIIKK*
Ga0153700_1050641	F006345	N/A	MKTEQALQILKEALNIAIAKGCFGLIETTNIVKALEHFDNQPSIEFGEITED*
Ga0153700_105065	F057210	N/A	MNTTDQQINQIMTAISEIVANTENTENLTKMDKLTQDSAKILVKELHLCILRHTYRIDNIRHNYDTMEELL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_10506

Overview

Ecosystem & Geography

Associated Families

Sequences