Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_10703 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_10703 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	16101
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (37.50%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

16101

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (37.50%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F025679	Metagenome / Metatranscriptome	200	Y
F035215	Metagenome / Metatranscriptome	172	N
F048090	Metagenome / Metatranscriptome	148	N
F086551	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1070312	F020860	AGTAG	MEITKAKKLKEGGYALYAVDPKTKTETQVGYIGEELPLDGYLPKGLKIENS*
Ga0153700_1070313	F016115	AGGA	MVGRDGDVAIYKKQLDEPDSEAYNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGFTCTSREDADKRFIQLKEKLSAYVATATLANGEKRGRGRPRKIDLTKTESVVV*
Ga0153700_1070314	F010746	AGTAG	MTYKCSVSGEALSPERVEALQVLGVPEALWTKKEHSQTRKLKAVYAGDDGSNDIVICDNVDGGSMFDNSVVAEVENE*
Ga0153700_1070318	F007359	AGGA	MKLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMNGITDKLGKKFRGAKGGLKAVAMNRIKNTIDNIPTENFVHTAQVEDIYSLGTISAEKLDTDS*
Ga0153700_1070326	F014486	GGA	MKIEKLLNENLESFYPWSDSDNPPLDTNKSFLEKQKEIDEVFEGWRASM*
Ga0153700_1070329	F048090	N/A	MTNQITSLATETCEEAYVDANAFFDYINSNDAVNAMLDALSGVYDSNETLVEVK*
Ga0153700_1070330	F024954	N/A	MKDKEMKNTIESLVVGKYYQIENHIAICEMLNSTSNKKCLSRISGVGSVLAFYDEVTEVEMTPELLKQCEERKNGTMNFIGSFNESSKYKGD*
Ga0153700_1070331	F086551	N/A	MKMKERINKMNIQINPELYENKNIYRYGHEKLLVKLFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGMYPVDAQ*
Ga0153700_1070335	F024058	N/A	MRENMRKNMTASEEVIITNSRNTPTYFGEIYLYEGTLVKVSYRTTAGNAVVTFLEGKDKDKVGTINLNNAKLVKENK*
Ga0153700_107035	F025679	N/A	MTKTFKIGETALGGTIKVVIPKTLTNIRIDVISTNHITRDSCDAPYLMNQYIYYSFDRIRIERDLFQIVSGYWSDEILKWIHKNWHAQLAKI*
Ga0153700_107037	F035215	AGGAGG	MKSSEQIAKEINDRIAEYKGLMVEHDNNQDAVHELESAIHELDHLLRWINE*
Ga0153700_107039	F010897	N/A	MPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYIRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHLYQYKKNKFYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKSNIKFNLV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_10703

Overview

Ecosystem & Geography

Associated Families

Sequences