Basic Information | |
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Taxon OID | 3300011339 Open in IMG/M |
Scaffold ID | Ga0153700_10864 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 14328 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Seoul, South Korea | |||||||
Coordinates | Lat. (o) | 37.5254611 | Long. (o) | 127.0168945 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F002433 | Metagenome / Metatranscriptome | 559 | Y |
F010982 | Metagenome | 296 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153700_108643 | F010982 | N/A | MIMVRLSREDEIIAHTAGLARESRYGSNPKFNGNKGNFHNAVVIHSEAVGAEMAVARYFEIEDFVPTVNTFKNEPDVTWNGIPIEVKQTPHKRGHLIVTEDDRDTDIAVLVVGESPTYYIMGWIPVGVAKRPRFASAQGGYWVSQINLQPIETLRKSMHANT* |
Ga0153700_108644 | F000403 | GGAG | MSDFMEIINPRTMTCKLMENGVVVEEYKVEQCDKCSKLVRFDAFGFQKGYGDEKVIWFCSGCR* |
Ga0153700_108647 | F002433 | N/A | VSIGEWTAVGGLAVAVLTAVYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEQRLDQLMIEIALRK* |
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